PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G028500.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 191aa    MW: 21402.8 Da    PI: 8.7941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G028500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-114086554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +  rE+ RRd++N++f+ L ++l +    +  K +K +iL  A++ +++L
  Aqcoe5G028500.2.p 40 KACREKMRRDKLNDRFADLSSILEPG---RPAKTDKTAILGDAIRVLNQL 86
                       678**********************8...89****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5123586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-83991No hitNo description
SuperFamilySSF474591.31E-1240102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-84086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-104192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1242109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MILFWPSCNI VPCNIQYLWC LHCGHIYRGR NESCSGPGSK ACREKMRRDK LNDRFADLSS  60
ILEPGRPAKT DKTAILGDAI RVLNQLRAES QELKVANEKL QEDIKNLKTE KNELREEKGL  120
LKADKERIEQ QMKAMAIVPG GIVPPHPAAY QAGVNKFMAF PSYGGYPMWQ YIPPAALDTS  180
QDHVLRPPVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5645451e-156AB564545.1 Coptis japonica bHLH2 mRNA for bHLH transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262298.11e-97PREDICTED: transcription factor bHLH104-like
SwissprotQ8L4673e-62BH104_ARATH; Transcription factor bHLH104
SwissprotQ9C6821e-62BH115_ARATH; Transcription factor bHLH115
TrEMBLE3WDH31e-107E3WDH3_COPJA; BHLH transcriptional factor
STRINGVIT_05s0049g00460.t011e-77(Vitis vinifera)
STRINGPGSC0003DMT4000442342e-77(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.18e-64bHLH family protein